Autodock Protein Data Bank Q (Partial Charge) & Type (pdbqt) — Open Babel v2.3.0 documentation

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# Autodock Protein Data Bank Q (Partial Charge) & Type (pdbqt)

## Read Options

`b` | Disable automatic bonding
`d` | Input file is in dlg (docking log file) format.

## Write Options

`b` | Enables automatic bonding before writing to pdbqt format
`r` | Outputs rigid molecule (no branches)
`s` | Outputs as a flexible residue
`p` | Preserves the atom indexes from the input file (default is to renumber sequentially).

### Navigation

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- next |
- previous |
- Open Babel v2.3.0 documentation »
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- Molecular dynamics and docking »